GgaEX1061244 @ galGal3
Exon Skipping
Gene
ENSGALG00000003526 | Q5ZKY5_CHICK
Description
NA
Coordinates
chr6:10478130-10485084:-
Coord C1 exon
chr6:10484908-10485084
Coord A exon
chr6:10480054-10480213
Coord C2 exon
chr6:10478130-10478337
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGCTTTTCTCAACAGCCT
3' ss Score
10.21
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACACTGCAATATTTGCAACAAAATGCTAAAGAAAGGGCGGAACTCACAGCAAACATGGCAGCTGGTGGCAGCACAAATTTCTCCATTCCCTCATCTACTTCCAAGATATCTCTGCAGGAACTTGAGGAGTTGCGCAAGCAGCTTGGCACTGTCACAGCCAACTCCAGTGCACAGCAG
Seq A exon
CCTCTTGAGCTCACACGAAAAATGCTCCGAGATAAGCAAAACAAGAAGAATTCAGGTCAGCCTGTTCCAGTGTTTCCATCCTGGGTGTATGAGAGGCCTGCGCTTATTGGTGATTTCTTAATTGGCACTGCTCTAAGCACTGACATAACGGTACCTATAG
Seq C2 exon
GTACTCTGCCATTAGCATCCCAAGAATCCATGATTGTGGAGGACTTGCTGTATGTTTTGATTGGTGTGGATGGAAGATACATCACAGCACAGCCTCTTGTTGGCAGGCAGAACCGAGCGTTTTTAGTTGATCCAAACTTGGACTTGTCCATCAAAGAGCTGGTGACCAGGATTCTTCCCGTAGCAGCAAGTTACTCTGCTGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.278 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAACTCACAGCAAACATG
R:
CAACAAGAGGCTGTGCTGTGA
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]