HsaEX6091287 @ hg19
Exon Skipping
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135107066-135113107:-
Coord C1 exon
chr10:135112931-135113107
Coord A exon
chr10:135111456-135111615
Coord C2 exon
chr10:135107066-135107273
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAATGTCCTTGCTAGTCT
3' ss Score
4.91
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
ACTCTGCAGTACTTACAACAGAATGCAAAAGAAAGAGCTGAGCTTGCAGCCGCTGCTGTGGGCAGCAGTACCACCAGCATCAACGTCCCTGCCGCGGCCTCCAAGATCTCCATGCAGGAGCTTGAGGAACTGAGGAAGCAGCTTGGCAGCGTGGCCACAGGCTCCACGCTGCAGCAG
Seq A exon
TCTCTGGAACTTAAAAGAAAGATGCTTCGAGACAAGCAGAACAAAAAAAATTCAGGCCAGCACCTCCCCATCTTCCCAGCATGGGTGTATGAGAGACCTGCCCTGATCGGGGATTTCCTGATTGGTGCTGGCATCAGCACAGACACCGCTTTGCCGATAG
Seq C2 exon
GCACGTTGCCCCTGGCCTCGCAGGAGTCGGCCGTGGTGGAGGACCTGCTGTACGTGCTGGTGGGCGTGGACGGGAGGTACGTCAGTGCTCAGCCCCTGGCTGGGAGGCAGAGCCGGACCTTCCTCGTGGACCCCAACCTGGACCTGTCCATCAGGGAGCTGGTGCACAGGATCCTCCCAGTGGCCGCCAGCTACTCCGCTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-'7-15,'7-11,9-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCAGGAGCTTGAGGAAC
R:
CACTGGGAGGATCCTGTGCA
Band lengths:
250-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)