RnoEX0095187 @ rn6
Exon Skipping
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212344972-212351874:-
Coord C1 exon
chr1:212351698-212351874
Coord A exon
chr1:212350493-212350652
Coord C2 exon
chr1:212344972-212345179
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAATGCCGTTACTAGTCT
3' ss Score
2.35
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACACTTCAGTATTTGCAACAGAATGCAAAGGAAAGAGCTGAACTTGCAGCTAGTGCTGCAGCCAGCAGTGCCACCGGTTTCAGCATCCCTGTTGCAGCCTCTAAGATGTCCACACAGGAGCTAGAGGAACTGAGGAAGCAGCTTGGCAGTGTGGCTACAGGCTCCACACTGCAGCAG
Seq A exon
TCTCTGGAACTTACAAGAAAGATGCTTCGAGACAAACAGAACAAAAAAAATTCAGGCCAGCCCCTCCCAGTCTTCCCAGCATGGGTATATGAGAGACCAACACTGGCTGGAGATTTCCTGATTGGTTCGGGCTTGAGCTCAGACACAACTTTGCCTATAG
Seq C2 exon
GTACATTGCCCTTGGCCTCCCAGGAGTCAGCAGTGGTGGAAGATCTGCTCTATGTGCTTGTGGGAGTGGATGGCAGGTACATCACTGCTCAGCCTTTGGCTGGGAGGCAGAACCGTACCTTCCTTGTAGATCCCAACCTGGACCTGTCCATCCGGGAGCTAGTAAACAGAATCCTCCCTGTGGCTGCCAGCTACTCTACTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.253 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGTTGCAGCCTCTAAGA
R:
TACTAGCTCCCGGATGGACAG
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]