MmuEX0049893 @ mm10
Exon Skipping
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:140007887-140031187:-
Coord C1 exon
chr7:140031011-140031187
Coord A exon
chr7:140029827-140029986
Coord C2 exon
chr7:140007887-140008094
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAATGTCCTTACTAGTCT
3' ss Score
4.96
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACACTTCAGTTTTTGCAACAGAATGCAAAGGAAAGAGCTGAGCTTGCAGCTAGTGCTGCAACTAGCAACACCACCAGCTTCAGCATCCCTGTTGCAGCCTCTAAGATGTCCACACAAGAGCTAGAGGAACTGAGGAAGCAGCTTGGCAGTGTATCCACAGGCTCCACACTGCAGCAG
Seq A exon
TCTCTGGAACTTACAAGAAAGATGCTTCGAGACAAACAGAACAAAAAAAATTCAGGCCAGCCCCTCCCTGTCTTCCCAGCATGGGTGTATGAGAGACCAACATTGGCTGGAGATTTCCTGATTGGCTCGGGCTTGAGCTCAGACACAGTTTTGCCTATAG
Seq C2 exon
GTACATTGCCCTTGGCCTCCCAGGAGTCAGCTGTGGTGGAAGATCTGCTCTATGTGCTTGTGGGTGTGGATGGCAGGTATATCACTGCTCAGCCTTTGGCTGGGAGGCAGAACCGTACCTTCCTTGTCGACCCCAACCTGGACCTGTCCATCCGGGAGCTAGTAAACAGAATCCTCCCTGTGGCCGCCAGCTACTCTACTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-'11-25,'11-11,13-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.124 A=0.241 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTAGCAACACCACCAGCT
R:
CAAGGAAGGTACGGTTCTGCC
Band lengths:
245-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types