DreEX6069733 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28658687-28660560:-
Coord C1 exon
chr12:28660434-28660560
Coord A exon
chr12:28659706-28659828
Coord C2 exon
chr12:28658687-28659622
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCGTCCTCTTTCTTGTTAGGTT
3' ss Score
10.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCCACAGCCAAAGAACTACTTGCTCTACTATGGCTTCTCAAGCTTTGCAATGGAAATGAATGAGCTGGTGCCTGAACTCAAGCCCCTGCTGCCCCCTACAGACACACGCCTGCGCCCTGACCAAAG
Seq A exon
GTTACTCGAAGAGGGGAAAGTAGAGGAGACTGATAAAAAGAAGGATGAGGTGGAGGAAAAGCAAAGAGAAAGGAGGAAAATAATGGCTAAGAGAGGAGAGGAGCACATCCCTCGCTTCTTCAG
Seq C2 exon
GAAATCTTTGGATGCTGCTGGAAGGGAAGTTTGGCTGACTAATGGGACATACTGGAAGATTAGAGAGAATCCTGGATTTGCCAATGTTAATAATCTGGAGTTATGGTGAAGGTTGATCACAGCAACATTGTGGACACTAGATCCCTGTGATAAGTCAAGTTTGCACATAAAGACTATACAAACATTGGGAACTTTGGAAGCAAAGATGAATTGCCAAGGGTTTTTTTTGTATTGAACCAAATCCATTGTGCGAGGATGATGCTTTTATCGAAAACGGCAACGGGGAGGGATGCATTTTGAACATTTCTATTTATTTCGTGATCGAGGATACAGAAACTTGGTGATGGTTTGACCATGATTTTCAATTTGGATAAAATAGAAGGCAAAAGGTAATGGAGGATGTTGTGGAGATATTTTTGAACATTTCTATGGATGATCTTACATTACATTTACAGTTGATTGAAGTACTTATGCACCAATGGATACTGGATAATTCGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-'29-27,'29-26,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.690 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.9=100)
A:
PF0123713=Oxysterol_BP=FE(11.6=100)
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCAAAGAACTACTTGC
R:
TGCTGTGATCAACCTTCACCA
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]