HsaEX6023326 @ hg19
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45884733-45886356:-
Coord C1 exon
chr17:45886230-45886356
Coord A exon
chr17:45885904-45886026
Coord C2 exon
chr17:45884733-45885765
Length
123 bp
Sequences
Splice sites
3' ss Seq
AGTTTGATCTGGATCCTCAGGTA
3' ss Score
5.15
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
ACTCAATGCCCCCCGACCATGAGCGAAACTTCGGCTTCACCCAGTTTGCCTTGGAGCTGAATGAGCTGACAGCAGAGCTGAAACGGTCGCTGCCTTCCACCGACACGAGACTCCGGCCAGACCAGAG
Seq A exon
GTACCTGGAGGAGGGGAACATACAGGCCGCTGAGGCCCAGAAGAGAAGGATCGAGCAGCTGCAGCGAGACAGGCGCAAAGTCATGGAGGAAAACAACATCGTACACCAGGCTCGCTTCTTCAG
Seq C2 exon
GCGGCAGACGGATAGCAGCGGGAAAGAGTGGTGGGTGACCAACAATACCTACTGGAGGCTGCGGGCCGAGCCAGGCTATGGGAACATGGATGGGGCCGTGCTCTGGTAGCCCTGGCCCCGGGGGCAGGAGGCTCTGGTTCCTCACTCCTCCTGCCTCCACCCCCTACCATGGACACATGGGTGAGGCCGGGCTCCCCGCCTCACTGCCCTTGAGACCAAAGGGGCAGCCCTGGCCCTCCCTCCCCTCTGCTGGCCAGAGGGTCTGCATCTCAGCCCACCCCCAACCCCACCGTTTGGGGTGAGAAGCAGAATCTGTGCTTCCCCAGTCTCCTTGCCCCAGACAACCAGCATGTAAGACCCTTCCCGCTTCACCATTCCGATTCCTGTCCCCTTTGGGGTACTTGGGGGAGACTCTGGCTCCCAGGATCTGTTCCCTATTTCAGTGCCTTCCTAGGACACAGGGGACTCCTTGACGCTCCCCAGGCTTTCTGTGCCCAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.0=100)
A:
PF0123713=Oxysterol_BP=FE(11.7=100)
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCGGCTTCACCCAGTTTG
R:
CAGGAGGAGTGAGGAACCAGA
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)