BtaEX6088107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39263449-39265047:+
Coord C1 exon
chr19:39263449-39263575
Coord A exon
chr19:39263765-39263887
Coord C2 exon
chr19:39264069-39265047
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACGGCAGTCTGGGTGCCCAGGTA
3' ss Score
1.33
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
ACTCAATGCCCCCAAACTATGAGCGAAACTTCGGCTTCACTCAGTTTGCCTTGGAGCTGAATGAGCTGACTGCAGAGCTGAAACGGTCCCTGCCTTCCACGGACACGCGGCTCCGGCCAGACCAGAG
Seq A exon
GTACCTGGAGGAGGGGAACATACAGGCGGCCGAGGCCCAGAAGAGAAGGATCGAGCAGCTTCAGCGAGACAGGCGCAAAGTGATGGAGGAGAACAACATTGTCCACCAGGCGCGCTTCTTCAG
Seq C2 exon
GCGGCAGACGGACAGCAGCGGGAAGGAGTGGTGGGTGACTAACAACACGTACTGGCAGCTGCGGGCCGAGCCGGGCTACGGGAACCTGGACGGGGCCGTGCTCTGGTAGCCCAGGCCCCGGGGGCAGGAGGCCTCGGTTCCTCCCTCCTGCCCCCACGGACACATGGACGGGGCCAGGCTCTCCCACTTGCTGCCCTGGAGACCGAAGGGGCAGCCCTGGCTCTGGCCCTCTCCCCTCTGCCGGCCAGAGGGGCTTCATCTCAGCCCATCTCCCACCCCTTGTTTGGGGTGGGAAGCAGGATTCCCCAGTCTTGTTGCCCCCAGACAACTGGCATGTAAGACCCTCCTTGCTCTGCCATCCGCCTTCCCTTCCTCCTGGGGTTCCTGGGGGAGTCTCCAGGCCCTCAAGATCTTCCCCATTTCAGTGCCTTCCTAGGACACAGGGGACCCCTTGATGCTCCCCAGGCTTCCTCGGCCCAGGACTCTGGCCCCTGCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'22-25,'22-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.381 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.0=100)
A:
PF0123713=Oxysterol_BP=FE(11.7=100)
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGCTTCACTCAGTTTGCC
R:
CAGGAGGGAGGAACCGAGG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]