MmuEX0033242 @ mm10
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97067434-97068904:+
Coord C1 exon
chr11:97067434-97067560
Coord A exon
chr11:97067665-97067787
Coord C2 exon
chr11:97067942-97068904
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCGAGGCTTGGATCATCAGGTA
3' ss Score
1.7
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
ATTCGATGCCTCCAGACCATGAGCGAAACTTCGGGTTCACTCAGTTTGCCCTGGAACTGAATGAGCTGACGTCAGAGCTGAAGCGGACCCTGCCTTCCACTGACACACGGCTCCGACCTGACCAGAG
Seq A exon
GTACCTGGAGGAGGGGAACATACAGGCTGCTGAGGCCCAGAAGAGAAGGATAGAGCAGCTCCAGCGAGACCGGAGAAGGGTGATGGAAGAAAATAACATAGTCCACCAGGCGCGCTTCTTCAG
Seq C2 exon
GCGACAGACAGACAGCAGCGGCAAGGAGTGGTGGGTGACCAACCATACTTACTGGAGGCTTCGAGCTGAGCCAGGCTATGGGAACCTGGATGGGGCCGTGCTCTGGTAACCCTGGCCTTGGGGCAGGAGACTCAAGGTCCTCGCTCCTGCTCCAACTCCTGTTATGGACACATGGGTGAGGTCAGGCTCCCTCGCCGTGCCCTTGAGTGCAAAGGGGCAGCCTAGGCTCTAGCCCTTTCCTCCTCTGCTGGCCAGAGGGGCTATATCTCAGCACACTCCCGTCCCAACGCTGGGGTGAAAGTGGACTCGGAACGGGAATCCGTGCTTTCCCCGTCTTGTGACCCCAAATCTGGCATGTCAGACCCTTCTCGCTCAGCCATCTTCCTCATCTGGGAGTGTTTGGGAGAGATGCCAGGTTCCCCAGACCTGCTCCCCATTTCAGTGCCTTCCTTGGACACAGAGGGCCCCTTGATGCTCCCCAGACTTCCCGTGCCCGGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.0=100)
A:
PF0123713=Oxysterol_BP=FE(11.7=100)
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCTGACGTCAGAGCTGA
R:
TGACCTCACCCATGTGTCCAT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types