RnoEX6049367 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:85002484-85004562:+
Coord C1 exon
chr10:85002484-85002610
Coord A exon
chr10:85002726-85002848
Coord C2 exon
chr10:85003000-85004562
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCGAGGTCTGGATCGTCAGATA
3' ss Score
0.52
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
ACTCGATGCCCCCAGACCATGAGCGAAACTTCGGGTTCACGCAGTTTGCCCTGGAGTTGAATGAGCTGACGGCAGAGCTGAAGAGGACGCTGCCTTCCACTGACACACGGCTACGGCCTGACCAGAG
Seq A exon
ATACCTGGAGGAGGGGAACATACAGGCCGCTGAGGCCCAGAAGAGAAGGATAGAGCAGCTACAGCGCGATCGGAGAAGAGTAATGGAGGAAAACAACATAGTCCACCAGGCGCGCTTCTTCAG
Seq C2 exon
GCGACAGACAGACAGCAGCGGCAAGGAGTGGTGGGTGACCAACCATACATACTGGAGGCTACGCGCTGAGCCAGGCTATGGGAACCTGGATGGGGCTGTGCTCTGGTAACCCTGGCCTCGGGGCAGGAGACTCTAGCTCATCACTCCTGCCCCAGCTCCTGCTATGGACATGTGGGTGAGGTCGGGCTCCCTCTCGCTGCCCTTGAGTGCCAAGGGGCAGCCTAGGCTCCAGCCCTTTCCCCCTCTGCTGGCCAGAGGGGTTGTATCTCAGCACAGTCCCGTTCCACCGCTGGGATGGAAGTGGAGTCTGTGTTCCCCCCACCCCCCGTCTTGTTACCCCAAGTCTGGCGTGTCAGACCCTTCTCGCTCAGCCACCCTCCTCCTCTGGGAGCGTTTGGGAGGGATGCCAGTTTCCCCAGATCCGTCCCCCATTTCAGTGCCTTCCTTGGACACAGAGGGCCCCTTGATGCTACCCAGACTTCCCGTGCCCAGGGTGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-'27-35,'27-34,28-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.405 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.0=100)
A:
PF0123713=Oxysterol_BP=FE(11.7=100)
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCGGGTTCACGCAGTTT
R:
GGGCAGGAGTGATGAGCTAGA
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]