DreEX6074439 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44548949-44566560:-
Coord C1 exon
chr19:44566487-44566560
Coord A exon
chr19:44559585-44559696
Coord C2 exon
chr19:44548949-44549206
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACATGTGTGTGTGTGTGTAGGTT
3' ss Score
9.27
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
AGCCGACTCGCACCACCTGTGAGAATCCTGGGACGCCCCGTTACGGCTCTCTCAACAGGACTTTTGGCTTTAAG
Seq A exon
GTTGGGAGTATGGTGGCTTTCCAGTGTCAGCCGGGTCACCTTCTGCAGGGCTCCACCACACGCCTCTGTCAGGCCGATCTCACCTGGAGCGGGACCCAGCCGGAGTGTATCC
Seq C2 exon
CCCACAGTTGTAAACAGCCGGAGAGTCCTCCCCATGTGGACGTTGTGGGAATGGATCTACCTTCCTATGGTTATACGCTCATCTACAGCTGTCAGAGCGGCTTCTTTCTGTCTGGTGGCTCTGAACACCGCGTCTGCAGATCTGACGGGACGTGGACCGGGAAGATGCCTGTGTGTCGAGGTAGCGAACACATCCCATTGTGCTTTAAAAAGCGTTCAGTCATTCAACTCAAACTTTGCACACATGAAGCAACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'63-61,'63-60,64-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=69.2)
A:
PF0008415=Sushi=PD(65.5=94.7)
C2:
PF0008415=Sushi=WD(100=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTGTGAGAATCCTGGGA
R:
CTCGACACACAGGCATCTTCC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]