DreEX6075128 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6196169-6197990:-
Coord C1 exon
chr15:6197862-6197990
Coord A exon
chr15:6196375-6196542
Coord C2 exon
chr15:6196169-6196239
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTATTTCTTGAAGCTT
3' ss Score
8.29
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATCGTCCTGACCCTCCTGAGGTTGAGATCAGAGAAGTAAAGGACCGGACCATCGCACTTCGCTGGACCATGGGCTTTGATGGCAACAGCCCCATTACAGGATACGACATCAACTATAAAAACAAATCAG
Seq A exon
CTTCCTGGGCCTCATCACAAATGACCAAAGACGTCTCCCCTCAGCTGAATCAGGCCACCATCATTGAGCTTCACCCTGCTTCCACCTACAACATCCGCATGTTCGCCAAAAACCAGATCGGAGAAAGCAGACCGAGCAACGAGCTGACCATCACCACTGACGAAGCAC
Seq C2 exon
CACCCGACGGAGCTCCTCAAGACGTGCAGCTGGAAGCGATCTCATCCCAGGGCATCAAAGTCACATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.398 C2=0.625
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
PF0004116=fn3=PD(51.7=78.9)
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTCCTGACCCTCCTGAG
R:
ATGTGACTTTGATGCCCTGGG
Band lengths:
195-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]