MmuEX6063649 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96697458-96715467:-
Coord C1 exon
chr16:96715339-96715467
Coord A exon
chr16:96709111-96709187
Coord C2 exon
chr16:96697458-96697528
Length
77 bp
Sequences
Splice sites
3' ss Seq
CACCCTTCCTCCACCTACAGCAT
3' ss Score
9.74
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACCCCCAGATCCTCCCGAGATTGAGATCAAAGATGTCAAAGCTCGCACCATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTATGACATTGAATGCAAAAATAAATCAG
Seq A exon
CATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCCAGCAACGAGATCACCATCACGGCGGATGAGGCAG
Seq C2 exon
CTCCTGATGGTCCACCTCAGGAAGTTCACTTGGAACCCACCTCATCTCAGAGTATCAGGGTTACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'24-24,'24-23,25-24
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.561 C2=0.792
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
PF0004116=fn3=PD(51.7=78.9)
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATCCTCCCGAGATTGA
R:
TCTGAGATGAGGTGGGTTCCA
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types