RnoEX6056698 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37111715-37129741:-
Coord C1 exon
chr11:37129613-37129741
Coord A exon
chr11:37123494-37123661
Coord C2 exon
chr11:37111715-37111785
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGAAAAACAAAACCCAAAAGACT
3' ss Score
-4.73
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACCCCCAGACCCCCCCGAGATTGAGATCAAAGATGTCAAAGCCCGCACAATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTACGACATTGAGTGCAAAAATAAATCAG
Seq A exon
ACTCCTGGGATTCTGCTCAAAGAACCAAAGATGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGATATCCACCCTTCCTCCACCTACAGCATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCCAGCAACGAGATCACCATCACGGCAGATGAGGCAG
Seq C2 exon
CTCCTGATGGTCCACCTCAGGAAGTGCACCTGGAACCCACCTCATCTCAGAGTATCAGGGTTACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'23-19,'23-16,26-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.593 C2=0.817
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
PF0004116=fn3=PD(51.7=78.9)
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGAGATTGAGATCAAAGA
R:
ACCCTGATACTCTGAGATGAGGTG
Band lengths:
178-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]