GgaEX6004381 @ galGal3
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111779601-111790534:-
Coord C1 exon
chr1:111790406-111790534
Coord A exon
chr1:111784086-111784253
Coord C2 exon
chr1:111779601-111779671
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTCTTATTGAATAGACT
3' ss Score
6.35
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AACCCCCTGACCCTCCTGAGATAGAAATCCGAGAGGTGAGAGCACGCAGCATTGCCCTCAGATGGACCATGGGATTTGATGGAAACAGCCCTATCACCGGCTATGATATTGAATGCAAGAACAAGTCAG
Seq A exon
ACTCTTGGGATTCTGTTCAGAGAACCAAAGATGTTTCTCCTCAGCTAAACCAAGCTACTATCATTGATCTCCATCCTTCCTCAACTTACAACATCCGCATGTATGCCAAGAATCGCATTGGCAAGAGTGAGGCCAGCAACGAGCTCACCATCACGACGGATGAAGCAG
Seq C2 exon
CTCCTGATGGTCCACCCCAGGATGTTCAGCTTGAGCCTATATCTTCACAAAGCATTAGGGTCACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.439 C2=0.583
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
PF0004116=fn3=PD(51.7=78.9)
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGACCCTCCTGAGATAG
R:
CCAGGTGACCCTAATGCTTTGT
Band lengths:
194-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]