MmuEX6063649 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96919065-96937074:-
Coord C1 exon
chr16:96936946-96937074
Coord A exon
chr16:96930718-96930885
Coord C2 exon
chr16:96919065-96919135
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGAAAAACAAAACCCAAAAGACT
3' ss Score
-4.73
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACCCCCAGATCCTCCCGAGATTGAGATCAAAGATGTCAAAGCTCGCACCATCACGCTCAGGTGGACCATGGGGTTTGATGGCAACAGCCCCATCACAGGCTATGACATTGAATGCAAAAATAAATCAG
Seq A exon
ACTCCTGGGATTCTGCTCAAAGAACCAAAGATGTTTCCCCTCAGCTGAACTCGGCCACCATCATTGATATCCACCCTTCCTCCACCTACAGCATCCGCATGTACGCCAAGAACCGGATTGGCAAGAGTGAGCCCAGCAACGAGATCACCATCACGGCGGATGAGGCAG
Seq C2 exon
CTCCTGATGGTCCACCTCAGGAAGTTCACTTGGAACCCACCTCATCTCAGAGTATCAGGGTTACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.561 C2=0.792
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.1=93.2)
A:
PF0004116=fn3=PD(51.7=78.9)
C2:
PF0004116=fn3=PU(22.0=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCCAGATCCTCCCGAG
R:
AGGTAACCCTGATACTCTGAGA
Band lengths:
195-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: