DreEX6077617 @ danRer10
Exon Skipping
Gene
ENSDARG00000010782 | zgc:55621
Description
zgc:55621 [Source:ZFIN;Acc:ZDB-GENE-040426-762]
Coordinates
chr15:35082152-35093569:+
Coord C1 exon
chr15:35082152-35082313
Coord A exon
chr15:35092372-35092525
Coord C2 exon
chr15:35093474-35093569
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCATTTTACCGTGTTTCAGTCT
3' ss Score
7.31
5' ss Seq
AAGGTCATC
5' ss Score
2.14
Exon sequences
Seq C1 exon
GCTGTTGTGGCGATGACTGACAGCAGTAGACCATGTGTTTTCATCTGGGCTGTGTTGCTGCTGCTGCCCACAGTCATCATGGCGTACAGGCCAGTGATTCTTGTTCACGGGCTGTTTGGTGGACCTGAACAAATGGAGATGTTAAAGAAATATATTAAACGG
Seq A exon
TCTCATCCAGGTACCAGCGTGACCACAATAGCCCTGTATGACTACACGGCCAGCGTGAAGCCTATGTGGCAACAGGTGGAAGGATTTAAAGAAGCCATCAGTCCCATCATGGAGAGCGCTGTAGATGGCGTCCATCTCATCTGCTTTTCACAAG
Seq C2 exon
GTGGTTTGATATGTCGAGGAGTTCTTGCTACCGTTCCTCATCACAATGTTCGCTCTCTGATATTCCTGTCTTCACCACTAGCTGGACAGTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010782-'0-3,'0-2,4-3=AN
Average complexity
A_C3
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=PU(10.4=54.0)
A:
PF0208910=Palm_thioest=FE(19.6=100)
C2:
PF0208910=Palm_thioest=FE(12.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGGCGATGACTGACAG
R:
CCAGCTAGTGGTGAAGACAGG
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]