DreEX6080009 @ danRer10
Exon Skipping
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20270242-20274368:-
Coord C1 exon
chr23:20274205-20274368
Coord A exon
chr23:20270537-20270761
Coord C2 exon
chr23:20270242-20270459
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTCTCTATGAACCAGGTC
3' ss Score
7.7
5' ss Seq
GGAGTAGGT
5' ss Score
3.34
Exon sequences
Seq C1 exon
GTGTGCTAATGGCTACTATGGTAACCCAGTCCTTGGTTTAGGGAGTCAGTGTCGGCCCTGCCCCTGTCCTGAGGGCCCCAACAGCGGACGCCACTTTGCTGCCTCTTGTTACCAAGACAACCGAAGCCAACAGGTGGTCTGCAACTGCAACCAGGGTTACACAG
Seq A exon
GTCCACGTTGTGATGAATGTGCTCCTGGCTATTTTGGTGACCCGTCTAAGCCCGGTGGGCAGTGCCAGCCATGTCGTTGCAGTAATAACATCGACCTGTCAGATCCTGAGTCTTGTGACAAGCGCACTGGCCAGTGTCTGAAGTGCCTGTACAACACTGAAGGGCCAGACTGTAGTGTGTGCAGGAGCGGATACTATGGAGACGCTTCTCGACGCAACTGCCGGA
Seq C2 exon
AGTGCACCTGTAACTTCCTGGGCACAGAGCGCAGTCAGTGTCTGTCTCGAGATGACTGTGTGTGTCAGCGTGCCACTGGTCAGTGTCAGTGTCTGCCTAATGTTATTGGACAAACCTGTGATCACTGCGCTCCAAACTCCTGGAACCTGGCCAGCGGGCAAGGCTGTGAGCCCTGCGCATGTGACCCTAACAATGCCTACACATCTGCCTGTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084-'22-25,'22-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
C2:
PF0005319=Laminin_EGF=WD(100=75.3),PF0005319=Laminin_EGF=PU(29.2=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGTCCTTGGTTTAGGGA
R:
GCCAGGTTCCAGGAGTTTGG
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]