BtaEX0019922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51466367-51467150:+
Coord C1 exon
chr22:51466367-51466530
Coord A exon
chr22:51466617-51466841
Coord C2 exon
chr22:51466933-51467150
Length
225 bp
Sequences
Splice sites
3' ss Seq
CACCCTCCGACCGTGGGCAGGGC
3' ss Score
5.51
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTGCATTGCTGGCTTCCATGGGGACCCCCGGCTGCCCTACGGGGGCCAGTGCCGGCCCTGCCCCTGCCCCGAAGGCCCCGGGAGCCGGCGGCACTTTGCTACTTCCTGCCACAGGGATGGGTACTCGCAGCAGGTTGTGTGCCACTGCCGGGCAGGCTACACAG
Seq A exon
GGCTGCGATGCGAAGCTTGTGCCCCCGGGCACTTTGGGGACCCATCAAGGCCAGGCGGCGGGTGCCAACCATGCGAGTGCAGTGGGAACATTGACCCCACGGACCCGGATGCCTGTGACCCCCACTCGGGGCAATGCCTGCACTGCTTATACCACACGGAGGGGCCGCGCTGTGCCCACTGCAAGCCTGGCTTCCATGGGCAGGCTGCCCGACAGAGCTGTCACC
Seq C2 exon
GCTGTACCTGCAACCTGCTGGGCACAGATGCCCGGCAGTGTCCATCCACTGACCACTGCAACTGTGACCCAAGCAGCGGGCAGTGCCCATGCCTCCCCAATGTCCAGGGCCTGAGCTGTGACCGCTGTGCCCCCAACTTCTGGAACCTCACCAGTGGCCGTGGCTGCCAGCCCTGTGCCTGCCACCCGAGCCGAGCCAGAGGCCCTGCCTGCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
C2:
PF0005319=Laminin_EGF=WD(100=75.3),PF0005319=Laminin_EGF=PU(29.8=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATTGCTGGCTTCCATG
R:
CACAGCGGTCACAGCTCAG
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development