MmuEX6068891 @ mm9
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108388753-108389524:+
Coord C1 exon
chr9:108388753-108388916
Coord A exon
chr9:108388995-108389219
Coord C2 exon
chr9:108389307-108389524
Length
225 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCTTGACTGGACAGGGC
3' ss Score
6.81
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTGCATTGCTGGTTTTCATGGGGACCCACGGCTGCCATATGGGGGCCAGTGCCGGCCTTGTCCCTGCCCTGAAGGCCCTGGGAGCCAGCGACACTTTGCTACTTCTTGCCACCGGGATGGATATTCCCAGCAAATTGTGTGCCAGTGTCGAGAAGGCTACACAG
Seq A exon
GGCTTCGGTGTGAAGCTTGTGCCCCCGGGCACTTTGGGGACCCATCAAAGCCAGGTGGCAGGTGCCAACTGTGTGAGTGCAGTGGAAACATTGATCCCATGGACCCTGATGCCTGTGATCCCCACACGGGGCAATGCTTGCGTTGTTTACACAACACAGAGGGGCCCCACTGTGGCTATTGCAAGCCTGGCTTCCATGGGCAAGCTGCCCGACAGAGCTGTCACC
Seq C2 exon
GCTGTACCTGCAACCTTCTGGGCACAGATCCCAGGCGGTGCCCATCTACCGACCTGTGCCATTGTGACCCAAGCACTGGGCAGTGCCCATGCCTTCCCCATGTCCAAGGCCTCAACTGTGACCATTGTGCCCCCAACTTTTGGAACTTCACCAGTGGCCGTGGCTGCCAGCCTTGTGCTTGTCACCCAAGCCGGGCCAGAGGCCCTACCTGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'27-22,'27-21,28-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
C2:
PF0005319=Laminin_EGF=WD(100=75.3),PF0005319=Laminin_EGF=PU(29.8=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCTGGTTTTCATGGGG
R:
AAAAGTTGGGGGCACAATGGT
Band lengths:
303-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: