RnoEX6037627 @ rn6
Exon Skipping
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117276408-117277181:+
Coord C1 exon
chr8:117276408-117276571
Coord A exon
chr8:117276653-117276877
Coord C2 exon
chr8:117276964-117277181
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTGACTGTGGACAGGGC
3' ss Score
5.56
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTGCATTGCTGGTTTTCATGGGGACCCACGGCTGCCATATGGGGGCCAGTGCCGGCCTTGTCCCTGCCCTGAAGGCCCCGGGAGCCAGCGACACTTTGCTACTTCATGTCACCGGGATGGATATTCCCAGCAAATTGTGTGCCACTGTCGAGCAGGCTACACAG
Seq A exon
GGCTTCGGTGTGAGGCTTGTGCCCCCGGGCACTTTGGGGACCCATCCAAGCCAGGTGGCAGGTGCCAACTGTGTGAGTGCAGTGGGAACATTGACCCCACGGATCCCGGTGCCTGTGATCCCCACACGGGGCAATGCTTGCGCTGTTTACACCACACGGAGGGGCCCCACTGTGGCCATTGCAAGCCTGGCTTCCATGGGCAAGCTGCCCGACAGAGCTGTCACC
Seq C2 exon
GCTGTACCTGCAACCTTCTGGGCACAGATCCCCAGCGGTGCCCATCTACAGACCTGTGCCATTGTGACCCAAGCACTGGGCAGTGCCCATGCCTCCCCCATGTCCAAGGCCTCAGTTGCGACCGTTGTGCCCCCAACTTTTGGAACTTTACCAGTGGACGTGGCTGCCAGCCTTGTGCTTGTCACCCAAGCCGGGCCAGAGGCCCTACCTGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768-'28-23,'28-22,29-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
C2:
PF0005319=Laminin_EGF=WD(100=75.3),PF0005319=Laminin_EGF=PU(29.8=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCGACACTTTGCTACTT
R:
CTCATTGCAGGTAGGGCCTCT
Band lengths:
299-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]