GgaEX7007849 @ galGal4
Exon Skipping
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11550528-11551644:+
Coord C1 exon
chr12:11550528-11550691
Coord A exon
chr12:11550766-11550990
Coord C2 exon
chr12:11551430-11551644
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCGGTACTTTGTGCCAACAGGTC
3' ss Score
8.8
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTGTGCGGCCGGGCACTTTGGGAACCCTGCGCTGGGCTCCGGCCAGCACTGCCGGCCCTGCCCCTGCCCCGACGGACCCGGTGGCCCCCGGCACTTTGCTGCCTCCTGCTACCAGGATGGGCGCTCCCGGCAGGTTGTCTGCCACTGCAGCCCCGGGTACACAG
Seq A exon
GTCCCCGCTGTGACGAGTGTGCGCCCGGGTACTACGGGGACCCTCTGCAACCCGGCGGGCACTGCCGGCCCTGCCAGTGCCACAATAACATCGATACGACTGACCCAGAGGCGTGTGACCGGCGCACGGGGCAGTGCCTGCGATGCCTCTACAACACGGCAGGGCCACACTGTGCCGAGTGCCAGCCTGGGTACTATGGGGATGCCATGCGGCACAGCTGCAGGC
Seq C2 exon
GTTGCTCCTGCAACACACTGGGCACCGACCCCAACACCTGCGGGCCACAGCAGTGCCAGTGCGACCAACGCAGCGGGCAGTGCCACTGCCTGCCCCACGTGGAGGGACAGAGCTGTGACCGCTGCAGCCCCAACTTCTGGAACCTGGGCAGTGGGCAGGGCTGCGAGCCCTGTGCCTGCCACCCCCAGCACTCCTTGTCGCCTGCATGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802-'23-32,'23-30,24-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=67.1)
C2:
PF0005319=Laminin_EGF=WD(100=75.0),PF0005319=Laminin_EGF=PU(29.2=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGCACTTTGGGAAC
R:
CTGCCCAGGTTCCAGAAGTTG
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]