MmuEX6068891 @ mm10
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108486422-108487193:+
Coord C1 exon
chr9:108486422-108486585
Coord A exon
chr9:108486679-108486888
Coord C2 exon
chr9:108486976-108487193
Length
210 bp
Sequences
Splice sites
3' ss Seq
GACAGGGCTTCGGTGTGAAGCTT
3' ss Score
0.47
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GTGCATTGCTGGTTTTCATGGGGACCCACGGCTGCCATATGGGGGCCAGTGCCGGCCTTGTCCCTGCCCTGAAGGCCCTGGGAGCCAGCGACACTTTGCTACTTCTTGCCACCGGGATGGATATTCCCAGCAAATTGTGTGCCAGTGTCGAGAAGGCTACACAG
Seq A exon
CTTGTGCCCCCGGGCACTTTGGGGACCCATCAAAGCCAGGTGGCAGGTGCCAACTGTGTGAGTGCAGTGGAAACATTGATCCCATGGACCCTGATGCCTGTGATCCCCACACGGGGCAATGCTTGCGTTGTTTACACAACACAGAGGGGCCCCACTGTGGCTATTGCAAGCCTGGCTTCCATGGGCAAGCTGCCCGACAGAGCTGTCACC
Seq C2 exon
GCTGTACCTGCAACCTTCTGGGCACAGATCCCAGGCGGTGCCCATCTACCGACCTGTGCCATTGTGACCCAAGCACTGGGCAGTGCCCATGCCTTCCCCATGTCCAAGGCCTCAACTGTGACCATTGTGCCCCCAACTTTTGGAACTTCACCAGTGGCCGTGGCTGCCAGCCTTGTGCTTGTCACCCAAGCCGGGCCAGAGGCCCTACCTGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'40-34,'40-33,41-34
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(35.4=30.4),PF0005319=Laminin_EGF=PU(61.4=62.5)
A:
PF0005319=Laminin_EGF=PD(36.8=27.6),PF0005319=Laminin_EGF=WD(100=65.8)
C2:
PF0005319=Laminin_EGF=WD(100=75.3),PF0005319=Laminin_EGF=PU(29.8=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGCTGGTTTTCATGGGG
R:
AAAAGTTGGGGGCACAATGGT
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types