DreEX6081736 @ danRer10
Exon Skipping
Gene
ENSDARG00000079291 | rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]
Coordinates
chr23:33490965-33494159:+
Coord C1 exon
chr23:33490965-33491025
Coord A exon
chr23:33493390-33493466
Coord C2 exon
chr23:33494013-33494159
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTATTTATGTCAGTGT
3' ss Score
6.01
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTCGTAAAGAGCTGGCATCAGTGCTGGTATTTGAAAGCCATGCCAAGGCGGGAACAGTCT
Seq A exon
TGTTCAGTCAGGGGGACAAAGGGACTTCCTGGTACATCATCTGGAGAGGCTCTGTTAATGTCATCACACACGGCAAG
Seq C2 exon
GGCTTGGTGACTACGCTTCATGAAGGAGATGATTTTGGCCAGTTGGCATTGGTGAATGACGCTCCTCGAGCCGCCACCATCATTTTAAGAGAGGACAATTGCCACTTTCTGCGGGTGGACAAGCAGGATTTTATACGCATTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079291-'9-9,'9-8,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(10.3=42.9)
A:
PF0002724=cNMP_binding=FE(28.7=100)
C2:
PF0002724=cNMP_binding=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTATTTGAAAGCCATGCC
R:
AAAATCCTGCTTGTCCACCCG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]