RnoEX0074022 @ rn6
Exon Skipping
Gene
ENSRNOG00000059961 | Rapgef3
Description
Rap guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:621869]
Coordinates
chr7:139245571-139246114:-
Coord C1 exon
chr7:139246054-139246114
Coord A exon
chr7:139245891-139245967
Coord C2 exon
chr7:139245571-139245717
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTGATTGGTGCTTCTGTCAGTGT
3' ss Score
4.94
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGAAACGGGAACTAGCTGCTGTTCTGCTCTTTGAACCACACAGCAAGGCAGGAACTGTGT
Seq A exon
TGTTCAGCCAGGGGGACAAGGGTACCTCATGGTACATTATCTGGAAGGGATCTGTCAATGTGGTGACCCATGGCAAG
Seq C2 exon
GGGCTGGTGACCACGTTGCACGAGGGAGATGACTTTGGACAGCTGGCTCTGGTGAACGACGCACCTCGAGCAGCCACCATCATCCTTCGAGAAAATAACTGTCACTTTCTGCGTGTGGACAAGCAGGACTTCAACCGCATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059961-'15-21,'15-18,16-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(8.2=33.3)
A:
PF0002724=cNMP_binding=FE(29.4=100)
C2:
PF0002724=cNMP_binding=FE(56.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAACTAGCTGCTGTTCTG
R:
GTCCACACGCAGAAAGTGACA
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]