GgaEX7011929 @ galGal4
Exon Skipping
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:434148-434793:+
Coord C1 exon
chrLGE22C19W28_E50C23:434148-434208
Coord A exon
chrLGE22C19W28_E50C23:434444-434520
Coord C2 exon
chrLGE22C19W28_E50C23:434647-434793
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACCACCACTTCCCCCCGCAGTGT
3' ss Score
9.88
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTGAAACGGGAGCTGGCATCTGTGCTGATGTTCGAGTCGCACCAGCGAGCCGGCACCGTGT
Seq A exon
TGTTCAGCCAAGGGGATAAAGGCACCTCGTGGTACATCGTCTGGAAGGGTTCGGTGAATGTGGTCACCCACGGCAAG
Seq C2 exon
GGCTTGGTGGCCACATTGCATGAAGGGGACGACTTTGGGCAGCTGGCACTGGTGAACGATGCTCCCCGAGCAGCCAGCATCATCCTGAGGGAGGACAACTGCCACTTCCTGCGGGTGGACAAGCAGGACTTCAACCGCATCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348-'15-14,'15-11,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(9.3=38.1)
A:
PF0002724=cNMP_binding=FE(29.1=100)
C2:
PF0002724=cNMP_binding=FE(55.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGTTCGAGTCGCACCAG
R:
GAGGATGCGGTTGAAGTCCTG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]