DreEX6083538 @ danRer10
Exon Skipping
Gene
ENSDARG00000060025 | nsmfa
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor a [Source:ZFIN;Acc:ZDB-GENE-091204-32]
Coordinates
chr21:13366373-13369326:-
Coord C1 exon
chr21:13369256-13369326
Coord A exon
chr21:13368951-13369030
Coord C2 exon
chr21:13366373-13366475
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTGTCATTTTCTGTCTCAGGGA
3' ss Score
9.56
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AGGAGATTGAGAAGAGATTGACAGCCTACAGAAGGGGCTCTAAAATCTGGCGAATGCTGATCTTCTGTCAG
Seq A exon
GGAGGCCCAGGGCACCTCTATCTGCTGAAGAATAAAGTGGCCACGTTTGCCAAGGTGGAGAAAGAGGAAGACATGAGCCA
Seq C2 exon
ATTTTGGAAACGCCTGAGCCGGTTTATGAGTAAATTAAATCCAGAGCCGAACCTGATCCACATCATGGGCTGCTACGTGCTGGGCAATCCGAATGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060025-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(16.3=100)
A:
PF142521=DUF4347=FE(18.4=100)
C2:
PF142521=DUF4347=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTGAGAAGAGATTGACAGCC
R:
TTCTCCATTCGGATTGCCCAG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]