HsaEX6064306 @ hg19
Exon Skipping
Gene
ENSG00000165802 | NELF
Description
nasal embryonic LHRH factor [Source:HGNC Symbol;Acc:29843]
Coordinates
chr9:140344375-140346887:-
Coord C1 exon
chr9:140346817-140346887
Coord A exon
chr9:140344628-140344707
Coord C2 exon
chr9:140344375-140344477
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGACCACAGCTTCTTACAGGGA
3' ss Score
0.82
5' ss Seq
TCAGTGAGA
5' ss Score
2.69
Exon sequences
Seq C1 exon
AGGAGATAGAGAGGAAGCTGAACGTCTACCACAAGGGAGCCAAGATCTGGAAAATGCTGATTTTCTGCCAG
Seq A exon
GGAGGTCCTGGACACCTCTATCTCCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTGGAGAAGGAAGAGGACATGATTCA
Seq C2 exon
CTTCTGGAAGCGGCTGAGCCGCCTGATGAGCAAAGTGAACCCAGAGCCGAACGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCCAATGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'17-23,'17-21,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(16.3=100)
A:
PF142521=DUF4347=FE(18.4=100)
C2:
PF142521=DUF4347=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGGAAGCTGAACGTCTACC
R:
CTTCTCTCCATTGGGGTTCCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)