GgaEX0012662 @ galGal3
Exon Skipping
Gene
ENSGALG00000008681 | NELF
Description
NA
Coordinates
chr17:2152544-2156229:+
Coord C1 exon
chr17:2152544-2152614
Coord A exon
chr17:2153827-2153906
Coord C2 exon
chr17:2156127-2156229
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGCCCATCTCTCTTTTGCAGGGG
3' ss Score
11.88
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGGAAATAGAGAAGAAGCTTAACATTTATCGGAAAGGCTGCAAAATCTGGAAGATGCTGATATTTTGCCAG
Seq A exon
GGGGGTCCAGGTCACTTATACTTGTTAAAGAACAAAGTTGCCACTTTCGCCAAAGTGGAGAAGGAGGAAGATATGATCCT
Seq C2 exon
CTTCTGGAAGAGGTTGAGCCGTCTGATGAGTAAAATCAACCCTGAACCAAATATCATTCACATCATGGGCTGCTATGTTCTTGGAAACCCCAATGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008681_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCTTAACATTTATCGGAAAGGC
R:
TGGGGTTTCCAAGAACATAGCA
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]