MmuEX6099398 @ mm10
Exon Skipping
Gene
ENSMUSG00000006476 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:MGI Symbol;Acc:MGI:1861755]
Coordinates
chr2:25060814-25061568:+
Coord C1 exon
chr2:25060814-25060884
Coord A exon
chr2:25061059-25061138
Coord C2 exon
chr2:25061493-25061568
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGACCGTGACCTCTTTCAGGGC
3' ss Score
8.84
5' ss Seq
CCAGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
AGGAAATAGAGAAGAAATTGAACATCTATCACAAGGGGGCCAAGATCTGGAAGATGCTGATTTTCTGCCAG
Seq A exon
GGCGGCCCTGGACACCTTTATTTGCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTGGAGAAGGAAGAGGACATGATCCA
Seq C2 exon
CTATTCCAGAACCTCAGGACCCTCATGACCCCTTACAAGGTTACCTTTGAGTCGCCTCTCGAGCTGTCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006476_MULTIEX2-6/8=5-8
Average complexity
C3
Mappability confidence:
90%=90=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(16.9=100)
A:
PF142521=DUF4347=FE(18.3=100)
C2:
PF142521=DUF4347=PD(10.6=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACATCTATCACAAGGGGGC
R:
GGGCAGACAGCTCGAGAGG
Band lengths:
127-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types