BtaEX6047492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030247 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr11:105680626-105681148:+
Coord C1 exon
chr11:105680626-105680696
Coord A exon
chr11:105680848-105680927
Coord C2 exon
chr11:105681046-105681148
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTAACCGCAGACTCTCACAGGGT
3' ss Score
-0.14
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
AGGAGATAGAGAAGAAGCTGAATATCTACCACAAGGGGGCCAAAATCTGGAAGATGCTGATTTTCTGCCAG
Seq A exon
GGTGGGCCAGGACACTTGTACCTGCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTGGAGAAGGAAGAGGACATGATCCA
Seq C2 exon
CTTCTGGAAGCGGTTGAGCCGCTTAATGAGCAAAGTGAACCCTGAGCCGAACGTCATCCATGTCATGGGCTGCTACGTCCTGGGGAACCCCAATGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030247-'20-22,'20-19,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF142521=DUF4347=FE(16.5=100)
A:
PF142521=DUF4347=FE(18.7=100)
C2:
PF142521=DUF4347=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATAGAGAAGAAGCTGAATATCT
R:
GGTTCCCCAGGACGTAGCAG
Band lengths:
159-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]