HsaEX6064306 @ hg38
Exon Skipping
Gene
ENSG00000165802 | NSMF
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:HGNC Symbol;Acc:HGNC:29843]
Coordinates
chr9:137449923-137452435:-
Coord C1 exon
chr9:137452365-137452435
Coord A exon
chr9:137450176-137450255
Coord C2 exon
chr9:137449923-137450025
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTGACCACAGCTTCTTACAGGGA
3' ss Score
0.82
5' ss Seq
TCAGTGAGA
5' ss Score
2.69
Exon sequences
Seq C1 exon
AGGAGATAGAGAGGAAGCTGAACGTCTACCACAAGGGAGCCAAGATCTGGAAAATGCTGATTTTCTGCCAG
Seq A exon
GGAGGTCCTGGACACCTCTATCTCCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTGGAGAAGGAAGAGGACATGATTCA
Seq C2 exon
CTTCTGGAAGCGGCTGAGCCGCCTGATGAGCAAAGTGAACCCAGAGCCGAACGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCCAATGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165802-'26-33,'26-31,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGGAAGCTGAACGTCTACC
R:
CTTCTCTCCATTGGGGTTCCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains