DreEX6083617 @ danRer10
Exon Skipping
Gene
ENSDARG00000073792 | man1b1a
Description
mannosidase, alpha, class 1B, member 1a [Source:ZFIN;Acc:ZDB-GENE-091116-34]
Coordinates
chr21:14127394-14131893:-
Coord C1 exon
chr21:14131705-14131893
Coord A exon
chr21:14129780-14129970
Coord C2 exon
chr21:14127394-14127514
Length
191 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCCATCTGTTCCCAGAAT
3' ss Score
8.99
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
AAAGACATTGGTTTCAGATTAATGCCTGCCTTCAAAACTCCATCTAAAATCCCCTACTCTGACGTAAACATTGGTAAGGGAACGGCTCATCCTCCACGCTGGACCACAGACAGCACAGTTGCAGAGGTGACCAGCATTCAGCTGGAGTTCAGAGAGCTCAGCCGGCTCACACAGGACCCGCAGTATCAG
Seq A exon
AATGCAGTGGAAGAGGTGACCAAACAGGTCCACAGATTGGAGGGGAAGCGTGATGGACTGGTGCCAATGTTCATCAACACAAACAGTGGCAAATTCACGCGGCGAGGGGCCTTTACCCTGGGGGCCCGAGCAGACAGTTACTACGAGTACCTGCTCAAACAGTGGCTTCAGGGCGGCAAGAAGGAGACTGA
Seq C2 exon
GCTGCTGGAGGACTATATTCAGGCAATAGAAGGTGTCAAGAAGAATCTTTTGAAACAGACTTCTACTAGTAAACTGACCTTTGTTGGAGAGCTTTCCAATGGCCGTCTTAATCCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073792-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
PF0153215=Glyco_hydro_47=FE(14.4=100)
C2:
PF0153215=Glyco_hydro_47=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACTCTGACGTAAACATTGG
R:
AAGACGGCCATTGGAAAGCTC
Band lengths:
248-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]