DreEX6083952 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18061910-18226545:-
Coord C1 exon
chr21:18225448-18226545
Coord A exon
chr21:18153361-18153477
Coord C2 exon
chr21:18061910-18061968
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTCCCTCTTTTCCAGTTT
3' ss Score
9.76
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGTAATAATGTGTCTTAATAATTGGATTATTTCGTAATTGCTCTATATTGGACAAACTGAACGGTTAGTTCTCAAACTAGGTGGGTTTAATACTTTAACAAGTTTATTAAGCGTGTTTATAATTGGGAAAGTCATTCCCGCATAACCAACCTTAGGCAGTTTAGTGCCCTTTGGACCGCGGAGAGGAAGTGGCATCATTTCTTGTCAGTTTTATCTTGGCACTTCTCTCGTTTGCGTGCGCTGGACTGCTCGTTTTCTTTATTCTTGCCTCCTGTTTTGCTTCGTTCTTGTCAGTATGGAGGAGTGGAGGCAGTGCGGGCGCTGGCTGATAGACTGTAAGGTTTTGCCCCCGAACCACCGGGTCGTTTGGCCCTCAGCGGTGGTTTTTGACCTGGCCCAGGCGCTCAGAGATGGGGTGCTCCTGTGCCAGATGCTGCACAATCTGTCTCCCGGTTCCGTGGACCTAAAGCAGATCAACTTCCGCCCTCAGATGTCACAG
Seq A exon
TTTCTGTGTCTGAAGAACATACGAACATTCCTGAAAGTGTGCCATGATAAGTTTGGCTTACGGAACAGCGAGCTGTTTGATCCCTTCGATCTCTTTGACGTGAGGGACTTTGGGAAG
Seq C2 exon
GTGATCTCTGCGCTGTCCAGAATCTCCCACAACAGCATCGCACAGATCAAAGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGAGGAGTGGAGGCAGT
R:
GCGATGCTGTTGTGGGAGATT
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]