RnoEX0097876 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5884244-5976244:-
Coord C1 exon
chr3:5975566-5976244
Coord A exon
chr3:5937593-5937709
Coord C2 exon
chr3:5884244-5884302
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTCTAGTTC
3' ss Score
13.08
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCGCACTTGTGTGTGTGAAGGGGGGACCCGGCACACTGCCCCGAGAGCGCCTAGTGGCCGCACGTGGGCGGGAGCCGCGGCCCGCTAGTAGCCCGAGGAGGAGGAGGAGGAAGAGGAGGGCCGTGTGGCCGCGCAGCGGGGACCCGGGGCCGCCTGCGCGAAGCCCCGCCCCGGCGGCCGAGCCCCGCGCGGGCGGTCGGGATGCTCCGCGGTCACCGCACTTTGGCCGGAGCGCTGCCCTGAGCCAGCTGGCCCAGCGGCCGCGGCGGCGAGCGCACGGGCGCCGCGGGCGCCATGGAGCAGTGGCGGCAATGCGGCCGCTGGCTCATTGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTCGGCGGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGCGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTTAAGGACATCAACTTCCGGCCGCAGATGTCCCAG
Seq A exon
TTCCTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCACGACAAATTTGGACTAAGGAACAGTGAGCTGTTTGACCCTTTCGACCTCTTTGATGTCCGAGACTTCGGGAAG
Seq C2 exon
GTCATCTCTGCCGTGTCCCGTCTGTCCCTGCACAGCATCGCGCAGAGCAAAGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCATTGACTGCAAGGT
R:
CTGATCCCTTTGCTCTGCGC
Band lengths:
237-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]