GgaEX1062965 @ galGal3
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7765512-7829144:-
Coord C1 exon
chr17:7828571-7829144
Coord A exon
chr17:7806643-7806759
Coord C2 exon
chr17:7765512-7765570
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATATTTTCCTTTCCCTCAGTTC
3' ss Score
9.82
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAACTTACGCGGCGGCAGCTCCTTTGTCCGCGGGGCGATGCGGCGTGGCTGAGCGAGGCAGTGGGGCCGCACAGGGGCAGCCCTCCGCCGGAAAACTCCGCGCCGGCCCCCGCCTCCTCTTCCTCCTCCTTCCTCCTCCTCCTCCGCGGAGGAGCGATGCGATGCTTCCCCGGGCGGCGGGCGGCGATGGAGCGGAGCCGTAGCGCGGTGGCTCGGAGCGGAGCGGCCCCTCGCTGAGCAGCGAGGAGGAGGAGGAGGAAGGAGGAAGGCCGAGAGCGCGAGCGGGGCCGCGGCCATGGAGGAGTGGAGGCAGTGCGGGCGGTGGTTGATCGACTGCAAAGTTTTGCCCCCCAACCACCGCGTGGTTTGGCCCTCGGCGGTGGTCTTCGACCTGGCGCAGGCGCTGCGGGACGGGGTGCTGCTGTGCCAACTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCAGGCCGCAGATGTCCCAG
Seq A exon
TTCCTCTGCTTGAAGAACATCCGAACCTTCCTCAAAGTGTGTCACGACAAGTTTGGGTTAAGAAACAGCGACCTGTTTGACCCCTTCGACCTGTTTGATGTGCGGGACTTTGGCAAG
Seq C2 exon
GTGATCTCTGCAGTATCCAGGCTCTCCTTCCACAGTATTGCTCAAACCAAAGGAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGAGTGGAGGCAGT
R:
TACTGTGGAAGGAGAGCCTGG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]