DmeEX0006972 @ dm6
Exon Skipping
Gene
FBgn0040068 | Vav
Description
The gene Vav guanine nucleotide exchange factor is referred to in FlyBase by the symbol DmelVav (CG7893, FBgn0040068). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is X:19261820..19273280. Its molecular function is described by: Ras guanyl-nucleotide exchange factor activity; Rac guanyl-nucleotide exchange factor activity. It is involved in the biological process described with 20 unique terms, many of which group under: embryo development ending in birth or egg hatching; regulation of adherens junction organization; epithelial cell migration; protein phosphorylation; positive regulation of catalytic activity. 17 alleles are reported. The phenotypes of these alleles manifest in: eye-antennal disc; embryonic/larval dorsal branch; midline crossing tract; longitudinal connective; dorsal closure embryo. The phenotypic classes of alleles include: increased mortality during development; some die during pupal stage; phenotype; immune response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:19261820-19263955:+
Coord C1 exon
chrX:19261820-19262593
Coord A exon
chrX:19263133-19263314
Coord C2 exon
chrX:19263881-19263955
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTGATCCATTGCAGTTC
3' ss Score
6.34
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
TGTGCTCGGGTTCACCAATCCAATCGCAACGGCCAACTGATGAGTCTCAATTGTGTCCATTAACGCGACGCGAGTAGCACCCACCCACCCTCCTCCTCCCCCCTCCAACACTTGCCAGTTGGGCCCGCGCCCCACTTCACACCATCACCGCCAACGCCAGCGCCCCACCCGCAACCCCTCCTCCAAATCCGAAACGAAAACCAAATCCCAATCCATATAGTAATACCCAACCCAACCACTGCGAGATGGCCAGCAGCAGTAGCAGCAACAGTTTTGGGGGCGTGGCCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTGACCAGGTGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGCCGAGATCCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCAACCTGGTCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAATCGCAAGCCGCAAATGGCACAG
Seq A exon
TTCCTGTGCAGCAAGAACATCAAGTTGTTCCTGGACGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCGAGCCGACAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACGCTCTCCAAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCTTAT
Seq C2 exon
TGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACGAGGCCATCTACAAGGACCTGCATTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0040068-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(54.7=75.3)
A:
PF0030726=CH=PD(43.6=83.6)
C2:
NO
Main Inclusion Isoform:
FBpp0112228

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0074448, FBpp0074449, FBpp0305901
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGTGCAAGGTCATTCC
R:
ATGCAGGTCCTTGTAGATGGC
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)