DreEX6095607 @ danRer10
Exon Skipping
Gene
ENSDARG00000057107 | VAV3 (1 of 3)
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr24:29647732-29741367:-
Coord C1 exon
chr24:29741183-29741367
Coord A exon
chr24:29709989-29710105
Coord C2 exon
chr24:29647732-29647790
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCTTTCTTGTCTAGTTT
3' ss Score
9.51
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCGCGCTATGGCTGATCAACTGTAAGGTGCTGCCACCGAACCATCGGGTGACATGGGAGTCCGCTCAGGTGTTCGACCTGGCCCAGACCCTGCGGGATGGAGTCCTCCTGTGTCAGCTTCTCAACAACCTGAGACCCCAGTCCATCAACCTGAGGGAGATCAACCTGAGACCTCAGATGTCACAG
Seq A exon
TTTCTCTGCCTGAAGAACATCAGGACATTTTTGCACGCCTGCTCAGAGATATTCGGCATGAAGAAAAGCGAGCTGTTCGAAGCGTTCGATTTGTTCGATGTTCGGGATTTCGGAAAG
Seq C2 exon
GTTATGGACACGCTGTCCAAACTCTCTCATACGCACATTGCACAGCAGACTGGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057107-'0-6,'0-4,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTATGGCTGATCAACTGT
R:
CTTATTCCAGTCTGCTGTGCA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]