RnoEX0097878 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212247451-212396493:+
Coord C1 exon
chr2:212247451-212247654
Coord A exon
chr2:212326427-212326543
Coord C2 exon
chr2:212396435-212396493
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTCTGTTCCTCAGTTT
3' ss Score
8.7
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGGAGCCGTGGAAGCAGTGCGCTCAGTGGCTCATCCACTGCAAAGTGCTGCCCGCCAACCACCGGGTGACCTGGGACTCGGCGCAGGTGTTCGACCTGGCGCAGACCCTCCGCGATGGAGTCCTGCTCTGCCAGCTGCTCAACAACCTGCGGCCACACTCCATCAATCTGAAGGAGATCAACCTGAGACCCCAGATGTCCCAG
Seq A exon
TTTCTCTGTCTGAAGAATATCCGGACATTTCTGGCCGCCTGCTGTGACACGTTCGGAATGAAGAAAAGTGAGCTTTTTGAGGCATTTGACCTATTCGATGTTCGTGACTTTGGAAAG
Seq C2 exon
GTTATAGAAACATTATCTCGCCTATCCCGAACACCAATAGCATTGGCCACAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'0-3,'0-2,5-3
Average complexity
C1
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCTCAGTGGCTCATC
R:
CTGATTCCTGTGGCCAATGCT
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]