MmuEX0051289 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109340653-109494836:+
Coord C1 exon
chr3:109340653-109341242
Coord A exon
chr3:109423991-109424107
Coord C2 exon
chr3:109494778-109494836
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTGTTTTCTGTTCTGCAGTTT
3' ss Score
8.98
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGGGGCGCCAGGCTCGCCAGTCGGAAGCCAGTGCTCAGCGGAGCCGGCCGGGGCGCACCGAGAGCGCGCGGCACTCGCTGCTGCAGCGGCGGCCGGGCCGCGGCGCATCCGGGCGGGGACCCGAGGCGAGTCCCACGCGGCGTCCCCGAGCCGCCGGCAGCGGCGCCCGCTCCAGAAAGGCAAAGCGAACCAGGGGCCATCAGCGCGACTGGCGTCGGCGGGGCTCTGACGCTCCGCGGCGGCCACCTCAGAGTCGCTGCCCGCCCCGGCCGGGCCGGGTCCGGGAGCCGTCGGACATGGAGCCGTGGAAGCAGTGCGCTCAGTGGCTCATCCACAGCAAGGTGCTGCCCCCCAACCATCGGGTGACCTGGGACTCGGCGCAGGTGTTCGACCTGGCGCAGACCCTTCGCGATGGAGTCCTGCTCTGCCAGCTGCTCAACAACCTGCGGCCACACTCCATCAATCTGAAGGAGATCAACCTGAGGCCCCAGATGTCCCAG
Seq A exon
TTTCTCTGTTTGAAGAACATCCGGACATTCCTGGCCGCCTGCTGCGATACCTTTGGAATGAGGAAAAGTGAACTTTTTGAGGCATTTGACCTATTTGATGTTCGAGACTTTGGAAAG
Seq C2 exon
GTTATAGAAACATTATCTCGGCTATCCCGAACACCAATAGCATTGGCCACAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCTCAGTGGCTCATC
R:
CTGATTCCTGTGGCCAATGCT
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types