HsaEX0070274 @ hg38
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107779434-107965144:-
Coord C1 exon
chr1:107964666-107965144
Coord A exon
chr1:107874901-107875017
Coord C2 exon
chr1:107779434-107779492
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTTCCATTCCTCAGTTT
3' ss Score
6.82
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCGGCAGCCGCCGCCGAGCCGGCCGGGGCGCACGGAGAGCGCGCGGGACTCGCTGCAGCGGCGGCCGGGTCGCGGCGCACCCGGGCCGGGACCGGAGCCGAGCCTAGCGCGGCGCCCGCGACCCGTCAGCCGCGGCTCCTGCTCCCTCGATCCCGCGCGGGGAAAGGGCCGGCGGCTGTTGGCGTCGGCGGGGCGCGGAGGAACCGCGGCGGCGGCGGCGGCGGCCGCATCCTTGCCGCCCGCCCCGGCCCAGCCGCGTCCCGGAGCCGTCGGGCATGGAGCCGTGGAAGCAGTGCGCGCAGTGGCTCATCCATTGCAAGGTGCTGCCCACCAACCACCGGGTGACCTGGGACTCGGCTCAGGTGTTCGACCTTGCGCAGACCCTCCGCGATGGAGTCCTGCTCTGCCAGCTGCTTAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
TTTCTCTGTTTGAAGAACATAAGGACATTTCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG
Seq C2 exon
GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGCCGTGGAAGCAG
R:
TGGCCAATGCTATAGGTGTTCG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development