HsaEX0070274 @ hg19
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12659]
Coordinates
chr1:108322056-108507585:-
Coord C1 exon
chr1:108507288-108507585
Coord A exon
chr1:108417523-108417639
Coord C2 exon
chr1:108322056-108322114
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTTCCATTCCTCAGTTT
3' ss Score
6.82
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCGTCGGCGGGGCGCGGAGGAACCGCGGCGGCGGCGGCGGCGGCCGCATCCTTGCCGCCCGCCCCGGCCCAGCCGCGTCCCGGAGCCGTCGGGCATGGAGCCGTGGAAGCAGTGCGCGCAGTGGCTCATCCATTGCAAGGTGCTGCCCACCAACCACCGGGTGACCTGGGACTCGGCTCAGGTGTTCGACCTTGCGCAGACCCTCCGCGATGGAGTCCTGCTCTGCCAGCTGCTTAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
TTTCTCTGTTTGAAGAACATAAGGACATTTCTCACGGCCTGTTGTGAGACGTTTGGAATGAGGAAAAGTGAACTTTTCGAGGCATTTGACTTGTTTGATGTTCGTGACTTTGGAAAG
Seq C2 exon
GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(89.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGCCGTGGAAGCAG
R:
TGGCCAATGCTATAGGTGTTCG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)