DreEX6026180 @ danRer10
Exon Skipping
Gene
ENSDARG00000075962 | vav3b
Description
vav 3 guanine nucleotide exchange factor b [Source:ZFIN;Acc:ZDB-GENE-070912-251]
Coordinates
chr2:16443184-16490952:-
Coord C1 exon
chr2:16490410-16490952
Coord A exon
chr2:16487296-16487412
Coord C2 exon
chr2:16443184-16443242
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTTTGATCTTTTAGTTT
3' ss Score
8.35
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GACTTCGCCGAAGATCAGAGGCACGTCGCACGACTCATTTATTATAAACCGTTGCCATAGTAGAATACGTAACTCAGCTGATGGGGATTTGTAGTCCCGCTAGACCACGGATAAACCAAACTAGTACACACGAGCTACGGCTTTGTCAACTTCAAGCGCGAGCTCAGAAAGAAAAAAAGACGGATGCCAAATATCACGCAAGGTGCGCGCTTCCCTTCGCGTGTTTCTACATCAAGCTTCCTTTGACGGAGTCTAATTTTCATAAAAGTTGTTCATTTTAATTTAACACCTGCATTATGGAGTACTGGAGGCAGTGCAGTCTGTGGCTGATCAATTGTAAAGTTTTGCCCCGGAATCATCGGGTCACGGCGGACTCGGCGCAGGTTTTTGATTTGGCCCAAACTCTTCGGGATGGGGTGCTTCTGTGCCAGCTGCTGAACAATCTCAGACCAGACACCATTAACCTGAAGGAGATCAATCTCAGACCACAGATGTCACAG
Seq A exon
TTTCTCTGTCTGAAGAATATCCGTACATTCCTGTCTGCATGCTGTGAAGAATTTGGGATGAAGAAGAGTGACTTGTTTGAGGCCTTCGATCTCTTTGATGTCCGTGATTTTGGAAAG
Seq C2 exon
GTCATCGACACACTATCAAAACTCTCATATACGCCTGTTGCTCAACAGAGTGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075962-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCTGTGGCTGATCAA
R:
CTGATGCCACTCTGTTGAGCA
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]