MmuEX6078792 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57418523-57436033:+
Coord C1 exon
chr17:57418523-57418824
Coord A exon
chr17:57435405-57435521
Coord C2 exon
chr17:57435975-57436033
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCATTTCTCTTTGCCATAGTTC
3' ss Score
8.29
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTGTAGTTGTCCCCACTGGGGCAGGCGGCGGCGGTGGTGAAGGAACGAGGGTGCACGGGGCCTCCCCGAGGGGCCAAGTGAGAGGCCGGCAGCCACCATGGAGCTCTGGCGACAGTGCACCCACTGGCTGATCCAGTGTCGGGTGCTGCCTCCCAGCCACCGTGTGACCTGGGAGGGGGCCCAGGTGTGTGAGCTGGCACAGGCACTGCGGGACGGTGTCCTCTTGTGCCAATTGCTTAACAACCTGCTTCCCCAGGCCATTAATCTTCGCGAGGTTAACTTGCGGCCCCAGATGTCCCAG
Seq A exon
TTCCTTTGTCTTAAGAACATTCGAACCTTCCTGTCTACTTGCTGTGAGAAGTTCGGCCTCAAGCGCAGTGAACTCTTTGAGGCTTTTGACCTCTTCGATGTGCAGGACTTTGGAAAG
Seq C2 exon
GTCATCTACACCCTGTCTGCTCTGTCATGGACACCCATTGCCCAGAACAAAGGAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCACCATGGAGCTCTG
R:
GGTGTCCATGACAGAGCAGAC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: