MmuEX6078792 @ mm10
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57279357-57296610:+
Coord C1 exon
chr17:57279357-57279401
Coord A exon
chr17:57295982-57296098
Coord C2 exon
chr17:57296552-57296610
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCATTTCTCTTTGCCATAGTTC
3' ss Score
8.29
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCATTAATCTTCGCGAGGTTAACTTGCGGCCCCAGATGTCCCAG
Seq A exon
TTCCTTTGTCTTAAGAACATTCGAACCTTCCTGTCTACTTGCTGTGAGAAGTTCGGCCTCAAGCGCAGTGAACTCTTTGAGGCTTTTGACCTCTTCGATGTGCAGGACTTTGGAAAG
Seq C2 exon
GTCATCTACACCCTGTCTGCTCTGTCATGGACACCCATTGCCCAGAACAAAGGAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'2-6,'2-4,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=FE(26.4=100)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTAATCTTCGCGAGGTT
R:
CCTTTGTTCTGGGCAATGGGT
Band lengths:
98-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types