HsaEX6092361 @ hg19
Exon Skipping
Gene
ENSG00000141968 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12657]
Coordinates
chr19:6772722-6821691:+
Coord C1 exon
chr19:6772722-6773022
Coord A exon
chr19:6820713-6820829
Coord C2 exon
chr19:6821633-6821691
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTGTCTCCTCACAGTTC
3' ss Score
11.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTAGCTGTCGCTCCACAGGCGAGCAGGGCAGGCGTGCGGGCGGGTGGGTGGTGGAGGCTGCGAGGGTGCACGGCCGGCCCTGGGCAGGCGGTAGCCATGGAGCTGTGGCGCCAATGCACCCACTGGCTCATCCAGTGCCGGGTGCTGCCGCCCAGCCACCGCGTGACCTGGGATGGGGCTCAGGTGTGTGAACTGGCCCAGGCCCTCCGGGATGGTGTCCTTCTGTGTCAGCTGCTTAACAACCTGCTACCCCATGCCATCAACCTGCGTGAGGTCAACCTGCGCCCCCAGATGTCCCAG
Seq A exon
TTCCTGTGCCTTAAGAACATTAGAACCTTCCTGTCCACCTGCTGTGAGAAGTTCGGCCTCAAGCGGAGCGAGCTCTTCGAAGCCTTTGACCTCTTCGATGTGCAGGATTTTGGCAAG
Seq C2 exon
GTCATCTACACCCTGTCTGCTCTGTCCTGGACCCCGATCGCCCAGAACAGGGGGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141968-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
PF0030726=CH=PD(18.0=55.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCACCCACTGGCTCATC
R:
ATGATCCCCCTGTTCTGGGC
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)