RnoEX6038485 @ rn6
Exon Skipping
Gene
ENSRNOG00000050430 | Vav1
Description
vav guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:3951]
Coordinates
chr9:9645887-9675110:-
Coord C1 exon
chr9:9674907-9675110
Coord A exon
chr9:9646404-9646520
Coord C2 exon
chr9:9645887-9645945
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCTTTTCCCCATAGTTC
3' ss Score
10.14
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGGAGCTCTGGCGACAGTGCACCCACTGGCTGATCCAGTGTCGGGTGCTGCCTCCCAGCCACCGTGTGACCTGGGAGGGGGCCCAGGTGTGTGAGCTGGCACAGGCACTGCGGGATGGTGTCCTCCTGTGTCAACTGCTTAACAACCTGCTCCCCCACGCCATCAATCTGCGGGAAGTTAACTTGTGGCCCCAGATGTCCCAG
Seq A exon
TTCCTTTGTCTTAAGAACATCCGAACCTTCCTGTCTACTTGCTGTGAGAAATTCGGCCTCAAGCGCAGCGAACTCTTTGAGGCTTTTGACCTCTTTGATGTGCAGGACTTTGGAAAG
Seq C2 exon
GTCATCTACACCCTGTCTGCCCTGTCATGGACACCCATTGCCCAGAACAAAGGGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050430-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACCCACTGGCTGATC
R:
TCCCTTTGTTCTGGGCAATGG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]