BtaEX0039579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35428177-35625130:+
Coord C1 exon
chr3:35428177-35428380
Coord A exon
chr3:35519208-35519324
Coord C2 exon
chr3:35625072-35625130
Length
117 bp
Sequences
Splice sites
3' ss Seq
AGCTATTTCCCATTCCTCAGTTT
3' ss Score
5.33
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGGAGCCGTGGAAGCAATGCGCCCAGTGGCTCATCCACTGCAAGGTGCTGCCCGCCAACCACCGGGTGACCTGGGACTCGGCGCAGGTGTTTGACCTGGCCCAGACCCTCCGCGATGGAGTCATGCTCTGCCAGCTGCTCAACAACCTCCGGGCGCACTCCATCAACCTGAAGGAGATCAACCTGAGGCCGCAGATGTCCCAG
Seq A exon
TTTCTCTGTTTGAAGAACATAAGGACATTCCTCACGGCCTGTTGTGAGACGTTTGGAATGAGAAAGAGTGAACTGTTCGAGGCATTTGACCTGTTTGATGTCCGTGACTTCGGAAAG
Seq C2 exon
GTAATAGAAACGTTATCGCGACTTTCTCGCACACCTATAGCGTTGGCCACAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'0-9,'0-0,7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(58.1=73.5)
A:
PF119713=CAMSAP_CH=PD(39.5=87.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCCGTGGAAGCAATG
R:
CTGTGGCCAACGCTATAGGTG
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development