DreEX6090203 @ danRer10
Exon Skipping
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1902063-1906409:+
Coord C1 exon
chr11:1902063-1902154
Coord A exon
chr11:1906050-1906207
Coord C2 exon
chr11:1906330-1906409
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGTGTGTGTGTCCAGCAA
3' ss Score
6.98
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTTATGGCTTTGTGGATTTCGACAGTCCTGCAGCAGCACAGAAGGCCGTGACCGCGCTGAAGTCCACCGGTGTTCAAGCTCAAATGGCCAAA
Seq A exon
CAACAGGAGCAGGATCCCACAAACCTGTACATCTCCAATCTGCCGGTGTCGATGGACGAGCAGGAGCTGGAGGCCATGCTGAAGTCTTTCGGCCAGGTGATCTCCACACGCATCCTGCGAGACGCTAACGGCACAAGCAGAGGAGTGGGCTTCGCAAG
Seq C2 exon
GATGGAGTCCACAGAGAAATGTGAAGCTATTATTCAGCATTTTAATGGAAAATATATCAAAACCCCACCAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.283 C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(39.7=87.1)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCTTTGTGGATTTCGACAGT
R:
CTGGAACTCCTGGTGGGG
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]