DreEX6092662 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34385704-34387746:-
Coord C1 exon
chr11:34387550-34387746
Coord A exon
chr11:34386569-34386713
Coord C2 exon
chr11:34385704-34385862
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTTTATATATGTGAACAGAGA
3' ss Score
5.29
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCTGAGTGGAGATACATGTTATCTGGAGGTCAAACACAGCAACAAACTCCTAATCCTGCTCCAAACTGGCTATCCACGAGGGCCTGGCAGGATATACTGGCATTAAGTGCCTTGCCCAGCTTCAGTAACCTGCCACAAAGTTTCTCCAAACACGAGTCTGCCTTCAAGAGTATATTTGACAGCAGCCAGCCACACAG
Seq A exon
AGAGCCTCTACCAGGTGAATGGGAAAGCCAATTAGACTCATTCCAGAAGCTGTTAATTCTGCGCTGTCTGCGAGCTGACCGGCTCACTCACGGCCTGCAGGACTTTGTGTCATCACAGCTGGGTCAGCGTTTCATTGAACCCCAG
Seq C2 exon
ACATCAGACCTGTCTGTGGTGTTTAAAGAGTCGTCTCCCTCCACACCTCTCATTTTCGTGCTTTCTCCCGGAACCGATCCTGCTGCCGACCTCTATAAGTTTGCAGAGATCATGAAGTTTTCAAAGAAGATGAACGCAATTTCCCTCGGCCAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'73-74,'73-73,74-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(19.4=81.8)
A:
PF0302810=Dynein_heavy=FE(17.3=100)
C2:
PF0302810=Dynein_heavy=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTCAAACACAGCAACA
R:
GTTCCGGGAGAAAGCACGAAA
Band lengths:
248-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]