GgaEX6009923 @ galGal3
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2924402-2925631:+
Coord C1 exon
chr12:2924402-2924598
Coord A exon
chr12:2924935-2925079
Coord C2 exon
chr12:2925473-2925631
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCAAAATAACTGCTTTGCAGAGA
3' ss Score
3.67
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GATGAGTGGCGATACCTGCTCTCAGGGGGAGCTGTAAAGGAGGTGCAGGAGAACCCAGCTCCAGACTGGCTCAATGAGCGAGCATGGGGAGACATCCTGGCTTTGAGCAACCTGAAGAACTTCTCTGGCTTTGCCAATGACTTTGTCGCCAACCTTGCAGCATTCAGGGCCATCTTTGACAGCCACAAACCTCACAG
Seq A exon
AGAGACCCTGCCTGGGAAGTGGGATGTTGAGCTTGATGCCTTCCAGAAGCTGCTGGTTCTGCGGTGTCTGCGGGGAGATAAGATCACCAATGCCATGCAGGACTTCGTGGCACTGAACCTGGATCGGCACTTCATTGAGCCTCAG
Seq C2 exon
ACTGCTGACCTCTCCATCGTGTTCAGGGAATCCAGTGCCACCACCCCCCTCGTGTTCGTGCTGTCCCCAGGCACTGACCCAGCTGCCGACCTTTACAAGTTTGCTGAAGAGATGAAGTTCTCCAAAAAGCTCTCTGCCATTTCCCTGGGCCAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297-'72-76,'72-74,74-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(7.8=82.1)
A:
PF0302810=Dynein_heavy=FE(6.8=100)
C2:
PF0302810=Dynein_heavy=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCAGACTGGCTCAATG
R:
ACTTGTAAAGGTCGGCAGCTG
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]